BLASTN 2.2.18 Mar-02-2008
Reference: Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig88
(1575 letters)
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
1 sequences; 430597 total letters
Searching................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57013877|ref|NC_006581.1| Nicotiana tabacum mitochondrion ... 1858.0 0.0
>ref|NC_006581.1| Nicotiana tabacum mitochondrion, complete genome
Length = 430597
Score = 1857.96 bits (937.0), Expect = 0.0
Identities = 1019/1051 (97%)
Strand = Plus/Minus
Query: 1557 TTGGTACACGCCAA----TTCCATTTCGCCGGATTGAAAGAGCCATCAATCACTATGATC 1502
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 156115 TTGGTACACGCCAAAGCGTTCCATTTCGGCGGATTGAAAGAGCCATCAATCACTATGATC 156174
Query: 1501 TCTTTCTTAGAAAAGAAATTGCGTAAATTCTGCCTTTTTTGATCCCATGCTTTCCGTTGG 1442
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 156175 TCTTTCTTAGAAAAGAAATTGCGTAAATTCTTCCTTTTTTTCTCCCATGCTTTCCGTTGG 156234
Query: 1441 TCAACAACCAACTAAA----TCTATACTTCTTCACTACTCCTACAGGGAAGGTGGAAGAA 1386
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 156235 TCAACAACCAACTAAAGTGCTCTATACTTCTTCACTACTCGTACAGGGAAGGTGGAAGAA 156294
Query: 1385 ATTCAGTCTCTCNNNNNNNNGGGGGGAGCAGAGCAGTCAAAGAATGAACCAAACCAAATG 1326
|| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 156295 ATGAAGTCTCTCTTTTTTTTGGGGGGAGCAGAGCAGTCAAAGAATGAACCAAACCAAATG 156354
Query: 1325 ATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATGGCAA 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156355 ATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATGGCAA 156414
Query: 1265 TTAGGATCTCAAGACGCAGCAACACCTATAATGCAAGGAATAACAGACTTACATCACGAT 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156415 TTAGGATCTCAAGACGCAGCAACACCTATAATGCAAGGAATAACAGACTTACATCACGAT 156474
Query: 1205 GTCTTTTTCTTCGTTATTCTGATTTTGGTTTTCGTATCATGGATCTTGGGTCGCGCTTTA 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156475 GTCTTTTTCTTCGTTATTCTGATTTTGGTTTTCGTATCATGGATCTTGGGTCGCGCTTTA 156534
Query: 1145 TGGCATTTCCACTATNNNNNNNNTCCAATCCCGCAAAGGATTGTTCATGGAACTACTATC 1086
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 156535 TGGCATTTCCACTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGGAACTACTATC 156594
Query: 1085 GAGATTCTTCGGACCATATTTCCTAGTATCATCCCTATGTTCATTGCTATACCATCATTT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156595 GAGATTCTTCGGACCATATTTCCTAGTATCATCCCTATGTTCATTGCTATACCATCATTT 156654
Query: 1025 GCTCTGTTATACTCAATGGACGAGGTAGTAGTAGATCCAGCCATTACTATAAAAGCTATT 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156655 GCTCTGTTATACTCAATGGACGAGGTAGTAGTAGATCCAGCCATTACTATAAAAGCTATT 156714
Query: 965 GGACATCAATGGTATCGGAGTGCGCCTCTTCACGAGGGTGATTAAAGTGCAACGAAATGC 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156715 GGACATCAATGGTATCGGAGTGCGCCTCTTCACGAGGGTGATTAAAGTGCAACGAAATGC 156774
Query: 905 CTTAAAGTTGAATAGGGTTCGCGAAGCATCTGGCTTACCGGTAATCTCCCATTCCCGCCG 846
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156775 CTTAAAGTTGAATATGGTTCGCGAAGCATCTGGCTTACCGGTAATCTCCCATTCCCGCCG 156834
Query: 845 TCGAGAGACTTTAATAACTATAGCATGCCAGAAACGGGGAGTTGAGGTGGTTAGACCTAT 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156835 TCGAGAGACTTTAATAACTATAGCATGCCAGAAACGGGGAGTTGAGGTGGTTAGACCTAT 156894
Query: 785 ACCCCGAAATGCTCCCAGCATAGGAGCCTATGGTTCCATTCTTGTTGTTGCTGGAGGTAC 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156895 ACCCCGAAATGCTCCCAGCATAGGAGCCTATGGTTCCATTCTTGTTGTTGCTGGAGGTAC 156954
Query: 725 ACATCCCTCTTCTCGGTGTGGAACGATATACGAGAAATAGATGCTCAGCCTGCAATGTCC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156955 ACATCCCTCTTCTCGGTGTGGAACGATATACGAGAAATAGATGCTCAGCCTGCAATGTCC 157014
Query: 665 GATAACGGCGCTGAAGTAGTGAATCTATCGGCACCATAGCAGTGGTATACAACTTTGGAC 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157015 GATAACGGCGCTGAAGTAGTGAATCTATCGGCACCATAGCAGTGGTATACAACTTTGGAC 157074
Query: 605 CTAACGGCCGGCCTAGTAACCTTTCGGAATGGGGGATCCCCGTTGGCAACAACCACGGTA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157075 CTAACGGCCGGCCTAGTAACCTTTCGGAATGGGGGATCCCCGTTGGCAACAACCACGGTA 157134
Query: 545 GTAGTTGCGGAACTACTGGGCCGGGAGAGGA 515
|||||||||||||||||||||||||||||||
Sbjct: 157135 GTAGTTGCGGAACTACTGGGCCGGGAGAGGA 157165
Score = 864.799 bits (436.0), Expect = 0.0
Identities = 479/497 (96%)
Strand = Plus/Minus
Query: 492 GGAGAGGACAACCTCTTGTTCCTGCTCCTCTTTCTTCGCTTCGGGGACGGAGGTCCTACG 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157158 GGAGAGGACAACCTCTTGTTCCTGCTCCTCTTTCTTCGCTTCGGGGACGGAGGTCCTACG 157217
Query: 432 GTAGGTAACAGCAGGCACAAGCAAGTTGACCGAAGGGGACCAGCGCTTCTACTCCTCCAC 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157218 GTAGGTAACAGCAGGCACAAGCAAGTTGACCGAAGGGGACCAGCGCTTCTACTCCTCCAC 157277
Query: 372 CGAGGAGCCGTTCTTGCGAGAAGCAAGGGATGTCGTGAACGGTGGGAGGTCACAGAGAAT 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157278 CGAGGAGCCGTTCTTGCGAGAAGCAAGGGATGTCGTGAACGGTGGGAGGTCACAGAGAAT 157337
Query: 312 TGACCTATTCATAGAGTGATCCTATGATCGATACAGGATATAGACTATCTCATTCTTTAT 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157338 TGACCTATTCATAGAGTGATCCTATGATCGATACAGGATATAGACTATCTCATTCTTTAT 157397
Query: 252 TCTATTCTATTTCTG-----NNNNNNNNNNGAAGGGTGACTCAACTTCTCAGCTAGAGTT 198
||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 157398 TCTATTCTATTTCTGAAAGAAAAAAAAAAAGAAGGGTGACTCAACTTCTCAGCTAGAGTT 157457
Query: 197 GGTGGTGGGACCTGTTGGCATAATGCACGCTGGAACGTGGGAATTCGAGGTCTCATGAAC 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157458 GGTGGTGGGACCTGTTGGCATAATGCACGCTGGAACGTGGGAATTCGAGGTCTCATGAAC 157517
Query: 137 TACTACTAAAAACCAACCTTGTTTTTGTTTTGTTTGTGGACAAACGATATCCGGTCAGGC 78
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157518 TACTACTAAAAACCTACTTTGTTTTTGTTTTGTTTGTGGACAAACGATATCCGGTCAGGC 157577
Query: 77 CTATGGCTGGATCCTTTTAGATCTACGGGCCGGCCGGCCCCGGCCGTTTACATGAGCATA 18
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157578 CTATGGCTGGATCCTTTTAGATCTACGGGCCGGCCGGCCCCGGCCGTTTACATGAGCATA 157637
Query: 17 GGGAATCTNTACTCGAG 1
|||||||| ||||||||
Sbjct: 157638 GGGAATCTATACTCGAG 157654
Score = 157.099 bits (79.0), Expect = 3.43331e-39
Identities = 94/99 (95%)
Strand = Plus/Minus
Query: 1235 ATGCAAGGAATAACAGACTTACATCACGATGTCTTTTTCTTCGTTATTCTGATTTTGGTT 1176
|||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 215541 ATGCAAGGAAGAATAGACTTACATCATGATGTCTTTTTCTTCGTTATTCTGATTTTGGTT 215600
Query: 1175 TTCGTATCATGGATCTTGGGTCGCGCTTTATGGCATTTC 1137
|||||||||||||||||||||||| ||||||| ||||||
Sbjct: 215601 TTCGTATCATGGATCTTGGGTCGCACTTTATGTCATTTC 215639
Score = 89.6988 bits (45.0), Expect = 6.68569e-19
Identities = 51/53 (96%)
Strand = Plus/Minus
Query: 1183 TTTTGGTTTTCGTATCATGGATCTTGGGTCGCGCTTTATGGCATTTCCACTAT 1131
|||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 172065 TTTTGGTTTTCGTATCATGGATCTTGGGTCGCACTTTATGGCATTTCTACTAT 172117
Score = 81.7694 bits (41.0), Expect = 1.62981e-16
Identities = 66/74 (89%)
Strand = Plus/Plus
Query: 1399 CCTGTAGGAGTAGTGAAGAAGTATAGA----TTTAGTTGGTTGTTGACCAACGGAAAGCA 1454
|||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 25815 CCTGTACGAGTAGTGAAGAAGTATAGAGCACTTTGGTTGGTTGTTGACCAACGGAAAGCA 25874
Query: 1455 TGGGATCAAAAAAG 1468
||||| |||||||
Sbjct: 25875 TGGGAGAAAAAAAG 25888
Score = 81.7694 bits (41.0), Expect = 1.62981e-16
Identities = 66/74 (89%)
Strand = Plus/Minus
Query: 1468 CTTTTTTGATCCCATGCTTTCCGTTGGTCAACAACCAACTAAA----TCTATACTTCTTC 1413
||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 85348 CTTTTTTTCTCCCATGCTTTCCGTTGGTCAACAACCAACCAAAGTGCTCTATACTTCTTC 85407
Query: 1412 ACTACTCCTACAGG 1399
||||||| ||||||
Sbjct: 85408 ACTACTCGTACAGG 85421
Score = 81.7694 bits (41.0), Expect = 1.62981e-16
Identities = 66/74 (89%)
Strand = Plus/Plus
Query: 1399 CCTGTAGGAGTAGTGAAGAAGTATAGA----TTTAGTTGGTTGTTGACCAACGGAAAGCA 1454
|||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 145333 CCTGTACGAGTAGTGAAGAAGTATAGAGCACTTTGGTTGGTTGTTGACCAACGGAAAGCA 145392
Query: 1455 TGGGATCAAAAAAG 1468
||||| |||||||
Sbjct: 145393 TGGGAGAAAAAAAG 145406
Score = 81.7694 bits (41.0), Expect = 1.62981e-16
Identities = 66/74 (89%)
Strand = Plus/Minus
Query: 1468 CTTTTTTGATCCCATGCTTTCCGTTGGTCAACAACCAACTAAA----TCTATACTTCTTC 1413
||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 286848 CTTTTTTTCTCCCATGCTTTCCGTTGGTCAACAACCAACCAAAGTGCTCTATACTTCTTC 286907
Query: 1412 ACTACTCCTACAGG 1399
||||||| ||||||
Sbjct: 286908 ACTACTCGTACAGG 286921
Score = 79.787 bits (40.0), Expect = 6.44e-16
Identities = 43/44 (98%)
Strand = Plus/Minus
Query: 1365 GGGGGGAGCAGAGCAGTCAAAGAATGAACCAAACCAAATGATTG 1322
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 215435 GGGGGGAGCAGAGCAGTCAAAGAATGAACCAAACAAAATGATTG 215478
Score = 79.787 bits (40.0), Expect = 6.44e-16
Identities = 59/65 (91%)
Strand = Plus/Minus
Query: 1459 TCCCATGCTTTCCGTTGGTCAACAACCAACTAAA----TCTATACTTCTTCACTACTCCT 1404
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct: 257619 TCCCATGCTTTCCGTTGGTCAACAACCAACCAAAGTGCTCTATACTTCTTCACTACTCGT 257678
Query: 1403 ACAGG 1399
|||||
Sbjct: 257679 ACAGG 257683
Score = 65.9106 bits (33.0), Expect = 9.68551e-12
Identities = 39/41 (95%)
Strand = Plus/Plus
Query: 485 TCCTCTCCTTACAGTCAAGTGGCTTTCCGCTCCTCTCCCGG 525
|||||| |||||||||||||||||||| |||||||||||||
Sbjct: 298335 TCCTCTGCTTACAGTCAAGTGGCTTTCAGCTCCTCTCCCGG 298375
Score = 59.9635 bits (30.0), Expect = 5.97539e-10
Identities = 33/34 (97%)
Strand = Plus/Minus
Query: 518 AGGAGCGGAAAGCCACTTGACTGTAAGGAGAGGA 485
|||||||||||||||||||||| |||||||||||
Sbjct: 219070 AGGAGCGGAAAGCCACTTGACTCTAAGGAGAGGA 219103
Score = 59.9635 bits (30.0), Expect = 5.97539e-10
Identities = 36/38 (95%)
Strand = Plus/Minus
Query: 521 GAGAGGAGCGGAAAGCCACTTGACTGTAAGGAGAGGAC 484
||||||||| ||||||||||||||| ||||||||||||
Sbjct: 230161 GAGAGGAGCTGAAAGCCACTTGACTCTAAGGAGAGGAC 230198
Score = 55.9988 bits (28.0), Expect = 9.32959e-09
Identities = 34/36 (94%)
Strand = Plus/Plus
Query: 485 TCCTCTCCTTACAGTCAAGTGGCTTTCCGCTCCTCT 520
||||||||||| ||||||||||||||| ||||||||
Sbjct: 227972 TCCTCTCCTTAGAGTCAAGTGGCTTTCAGCTCCTCT 228007
Score = 54.0164 bits (27.0), Expect = 3.68647e-08
Identities = 27/27 (100%)
Strand = Plus/Plus
Query: 485 TCCTCTCCTTACAGTCAAGTGGCTTTC 511
|||||||||||||||||||||||||||
Sbjct: 66441 TCCTCTCCTTACAGTCAAGTGGCTTTC 66467
Score = 54.0164 bits (27.0), Expect = 3.68647e-08
Identities = 27/27 (100%)
Strand = Plus/Plus
Query: 485 TCCTCTCCTTACAGTCAAGTGGCTTTC 511
|||||||||||||||||||||||||||
Sbjct: 84280 TCCTCTCCTTACAGTCAAGTGGCTTTC 84306
Score = 54.0164 bits (27.0), Expect = 3.68647e-08
Identities = 27/27 (100%)
Strand = Plus/Plus
Query: 485 TCCTCTCCTTACAGTCAAGTGGCTTTC 511
|||||||||||||||||||||||||||
Sbjct: 128509 TCCTCTCCTTACAGTCAAGTGGCTTTC 128535
Score = 54.0164 bits (27.0), Expect = 3.68647e-08
Identities = 27/27 (100%)
Strand = Plus/Plus
Query: 485 TCCTCTCCTTACAGTCAAGTGGCTTTC 511
|||||||||||||||||||||||||||
Sbjct: 285780 TCCTCTCCTTACAGTCAAGTGGCTTTC 285806
Score = 54.0164 bits (27.0), Expect = 3.68647e-08
Identities = 27/27 (100%)
Strand = Plus/Minus
Query: 511 GAAAGCCACTTGACTGTAAGGAGAGGA 485
|||||||||||||||||||||||||||
Sbjct: 296944 GAAAGCCACTTGACTGTAAGGAGAGGA 296970
Score = 54.0164 bits (27.0), Expect = 3.68647e-08
Identities = 27/27 (100%)
Strand = Plus/Plus
Query: 485 TCCTCTCCTTACAGTCAAGTGGCTTTC 511
|||||||||||||||||||||||||||
Sbjct: 398914 TCCTCTCCTTACAGTCAAGTGGCTTTC 398940
Score = 54.0164 bits (27.0), Expect = 3.68647e-08
Identities = 27/27 (100%)
Strand = Plus/Plus
Query: 485 TCCTCTCCTTACAGTCAAGTGGCTTTC 511
|||||||||||||||||||||||||||
Sbjct: 417191 TCCTCTCCTTACAGTCAAGTGGCTTTC 417217
Score = 46.087 bits (23.0), Expect = 8.98675e-06
Identities = 26/27 (96%)
Strand = Plus/Minus
Query: 511 GAAAGCCACTTGACTGTAAGGAGAGGA 485
|||||||||||||||||||||| ||||
Sbjct: 174374 GAAAGCCACTTGACTGTAAGGAAAGGA 174400
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
Number of letters in database: 430597
Number of sequences in database: 1
Lambda K H
1.37 0.711 1.31
Matrix: BLASTN matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Length of database: 430597