BLASTN 2.2.18 Mar-02-2008
Reference: Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig81
(967 letters)
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
1 sequences; 430597 total letters
Searching................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57013877|ref|NC_006581.1| Nicotiana tabacum mitochondrion ... 621.0 4.81551e-179
>ref|NC_006581.1| Nicotiana tabacum mitochondrion, complete genome
Length = 430597
Score = 620.97 bits (313.0), Expect = 4.81551e-179
Identities = 346/357 (97%)
Strand = Plus/Minus
Query: 407 ATTCAATCAGTAAGAAAAGAAATATGGAATAAAGAGTTCAATTCCATAAAACATGTTCCA 348
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 264548 ATTCAATCAGTAAGAAAAGAAATATTACATAAAGAGTGAAATTCCATAAAACATGTTCCA 264607
Query: 347 CAGGGCACCTCTTCAATAAATCAGGACAAAGCGATTGATCCAGTTGAGAGCGTAGCGTAG 288
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264608 CAGGGCACCTGTTCAATAAATCAGGACAAAGCGATTGATCCAGTTGAGAGCGTAGCGTAG 264667
Query: 287 GAGACAGGTAAGATGACCATCAACGGACAAAAGCCTCTCATTATTATTATTTCACTTTTA 228
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264668 GAGACAGGTAAGATGACCGTCAACGGACAAAAGCCTCTCATTATTATTATTTCACTTTTA 264727
Query: 227 TGCTTCAATCAGGCCTATATTCGCATTTGAATGATACCAATCGAGATGGCTTTTTCAGGG 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264728 TGCTTCAATCAGGCCTATATTCGCATTTGAATGATACCAATCGAGATGGCTTTTTCAGGG 264787
Query: 167 ACTGGCCTCTTCCCTGAGGCAATCCCTGGGATTCAAAAGAGTGAGAAGGAACTTTCTCTG 108
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 264788 ACTGGCCTCTTCCCTGAGGCAATCCCTGGGATTCAAAAGAGAGAGAAGGAACTTTCTGTG 264847
Query: 107 TCCTATGCCCTCATCACTAACCATTCCCCTTATCTTTGCATTTCTTGATCGGTCGCT 51
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264848 TCCTATGCCGTCATCACTAACCATTCCCCTTCTCTTTGCATTTCTTGATCGGTCGCT 264904
Score = 236.393 bits (119.0), Expect = 2.82983e-63
Identities = 159/176 (90%)
Strand = Plus/Plus
Query: 778 ACAAGCCTACTCATCATCAAAGCAAGTCCAAGCCCATGCAAAAATGGCCTCATTGTCATG 837
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 137501 ACAAGCCTACTCATCATCAAAGCAAGTCCAAGCCCATGCAAAAATGACCTCATTGTCATG 137560
Query: 838 GGAGCCCTTTCCTTACTCCTCAATATAGTC----GTTCTATACATTAAGATTTGCAGCAC 893
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 137561 GGAGCCCTTTCCTTACTCCTCAATATAGTCGCAGGTTCTATACATTAAGATTTGCAGCAC 137620
Query: 894 CTATTCNNNAGCTGGGGNNTCGGCTTGNANGNAAAATCNNGANNGAAAGTCCATAT 949
|||||| |||||||| |||||||| | | |||||| || ||||||||||||
Sbjct: 137621 CTATTCAGGAGCTGGGGAATCGGCTTGCAAGGAAAATCTTGATTGAAAGTCCATAT 137676
Score = 79.787 bits (40.0), Expect = 3.93419e-16
Identities = 40/40 (100%)
Strand = Plus/Minus
Query: 43 CTGACGTTCGTTCTCTTCCTCTGTGCATCTCTGTGATGGG 4
||||||||||||||||||||||||||||||||||||||||
Sbjct: 115616 CTGACGTTCGTTCTCTTCCTCTGTGCATCTCTGTGATGGG 115655
Score = 69.8753 bits (35.0), Expect = 3.78962e-13
Identities = 35/35 (100%)
Strand = Plus/Minus
Query: 38 GTTCGTTCTCTTCCTCTGTGCATCTCTGTGATGGG 4
|||||||||||||||||||||||||||||||||||
Sbjct: 314923 GTTCGTTCTCTTCCTCTGTGCATCTCTGTGATGGG 314957
Score = 52.0341 bits (26.0), Expect = 8.89873e-08
Identities = 26/26 (100%)
Strand = Plus/Plus
Query: 500 GCCTTTAGTCTGCTTTGAATGATCCT 525
||||||||||||||||||||||||||
Sbjct: 322781 GCCTTTAGTCTGCTTTGAATGATCCT 322806
Score = 44.1047 bits (22.0), Expect = 2.1693e-05
Identities = 28/30 (93%)
Strand = Plus/Plus
Query: 789 CATCATCAAAGCAAGTCCAAGCCCATGCAA 818
||||||||||||||| ||||| ||||||||
Sbjct: 250824 CATCATCAAAGCAAGCCCAAGTCCATGCAA 250853
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
Number of letters in database: 430597
Number of sequences in database: 1
Lambda K H
1.37 0.711 1.31
Matrix: BLASTN matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Length of database: 430597