BLASTN 2.2.18 Mar-02-2008
Reference: Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,  Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),  "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig52
         (1382 letters)
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
         1 sequences; 430597 total letters
Searching................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
gi|57013877|ref|NC_006581.1| Nicotiana tabacum mitochondrion ... 1717.2    0.0

>ref|NC_006581.1| Nicotiana tabacum mitochondrion, complete genome 

 Length = 430597


Score = 1717.21 bits (866.0), Expect = 0.0
Identities = 991/1038 (95%)
Strand = Plus/Minus

Query: 1368  TTCGTCGTAAACCTAATTGGTTATTTCCAATTACGTAAATCAATAGTTCAAACCGCACTC 1309
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18044 TTCGTCGTAAACCTAATTGGTTATTTCCAATTACGTAAATCAATAGTTCAAACCGCACTC 18103

Query: 1308  AAAGGTAGGGCATTTCCCATTTTTATAGGAACTTCTGTACCAGAAACAATGGTATCTCCA 1249
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18104 AAAGGTAGGGCATTTCCCATTTTTATAGGAACTTCTGTACCAGAAACAATGGTATCTCCA 18163

Query: 1248  ATTATAGCCCCTCTGGGATGTAAAATATATCTCTTCTCACCATCCCCATAGTGTATGAGA 1189
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18164 ATTATAGCCCCTCTGGGATGTAAAATATATCTCTTCTCACCATCCCCATAGTGTATGAGA 18223

Query: 1188  CAAATTTATGCATTTCTATTAGGGTCGTATTCTATGGTTACGATTCTACCATATATGTCT 1129
             ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18224 CAAATGTATGCATTTCGATTAGGGTCGTATTCTATGGTTACGATTCTACCATATATGTCT 18283

Query: 1128  TTTTCATTCCGTCGAAAAGAGATTTTACGGTATAGACGCTTATGACCTCCCCCTCTATGC 1069
             ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 18284 TTTTCATTCCGTCGAAAATCGATTTTACGGTATAGACGCTTATGACCTCCCCCTCTATGC 18343

Query: 1068  CTTGCGGTAATGATTCCTCTGGCATTACGACCTTTACCACAACGATGCTGTCCATAGATC 1009
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 18344 CTTGCGGTAATGATTCCTCTGGCATTACGACCTTTACCACAATGATGCTGTCCATAGATC 18403

Query: 1008  AAATTATTTCGTGGATTGGATTTCACTTGACTGTCTACGGTTCCATTGCGTGTGCTCGGG 949
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18404 AAATTATTTCGTGGATTGGATTTCACTTGACTGTCTACGGTTCCATTGCGTGTGCTCGGG 18463

Query: 948   GTAGAAGTTTTGTATAAATGTATCGCCATGCTATTAAGTATTTTGATTTAAGTTCTTTTC 889
             ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 18464 GTAGAAGTTTTGTATAAATGTATCGCCATGCTATTAAGTATTTTTTTTTAAGTTCTTTTC 18523

Query: 888   TTTATAAGAGTTGGAATAGAATAACCCGGTTGAAGCGTAATGATCATACGTCTGTAATGC 829
             ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18524 TTTCTAAGAGGTGGAATAGAATAACCCGGTTGAAGCGTAATGATCATACGTCTGTAATGC 18583

Query: 828   ATTGTATGTCCCATAATAGGCCCCATTCTTCTACTCTTTCCCGGAAGTCGATGACTATTG 769
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 18584 ATTGTATGTCCCATAATAGGTCCCATTCTTCTACTCTTTCCCGGAAGTCGATGACTATTC 18643

Query: 768   ATAGCTATTACCTTGACACCAAAGAAGAGTTCGACCCAATGCTTTATTTCTGTCCTAGTT 709
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18644 ATAGCTATTACCTTGACACCAAAGAAGAGTTCGACCCAATGCTTTATTTCTGTCCTAGTT 18703

Query: 708   GATCCTGATTCGACATTATAAGTCTATTTATTTTTCCCCAATAACCGAATACTTTTGTCT 649
             ||| |||||||||||||| |||| |||| |||||||||||||||||||||||||||||||
Sbjct: 18704 GATTCTGATTCGACATTAGAAGTATATTGATTTTTCCCCAATAACCGAATACTTTTGTCT 18763

Query: 648   GTAAATACTGCATATTTGATTCCATCTATAAATCTATTTTCTTCCCTATGAGTGAAAGTC 589
             |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 18764 GTAAATACTGCATATTTGATTCCATCTATAAATCGATTTTCTTCCCTATGAGTTAAAGTC 18823

Query: 588   TCAATAAGAATGCTAGTTCTTACTGTTCATTATGATATGAATATACCCCATCAATTCGTT 529
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 18824 TCAATAAGAATGCTAGTTCTTACTGTTCATTATGATATGAATATACCACATCAATTCGTT 18883

Query: 528   ATGTATGGATGATGAGATTCCATTGATACAGAGCCAATTCCAATAGACTTATTGATTCCA 469
             |||||||||||||||||||||||||||||||||||||||||||||               
Sbjct: 18884 ATGTATGGATGATGAGATTCCATTGATACAGAGCCAATTCCAATA--------------- 18928

Query: 468   ATAGACTTATTGGAGGGTCCCATTGGTGTGCATCCAGTAGGAATTGAACCTACAAATTCG 409
                ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 18929 ---GACTTATTGGAGGGTCCCATTGGCGTGCATCCAGTAGGAATTGAACCTACGAATTCG 18985

Query: 408   CCAATTATGAGTTGGGCGCTTTAACCATTCAGCCATGGATGCGA--------AGCGAGTG 357
             |||||||||||||||||||||||||||||||||||||||||| |        ||||||||
Sbjct: 18986 CCAATTATGAGTTGGGCGCTTTAACCATTCAGCCATGGATGCAAAAAGACTCAGCGAGTG 19045

Query: 356   AAATAGGTTTTGGTATTC 339
             ||||||||||||||||||
Sbjct: 19046 AAATAGGTTTTGGTATTC 19081



Score = 69.8753 bits (35.0), Expect = 5.43588e-13
Identities = 62/72 (86%)
Strand = Plus/Minus

Query: 335   TTATGAGTTGGGCGTTTTAACCATTCAGCCATGGATGCGA--------AGCGAGTGAAAT 284
             |||||||||||||| ||||||||||||||||||||||| |        ||||||||||||
Sbjct: 18990 TTATGAGTTGGGCGCTTTAACCATTCAGCCATGGATGCAAAAAGACTCAGCGAGTGAAAT 19049

Query: 283   AGGTTTTGGTAT 272
             ||||||||||||
Sbjct: 19050 AGGTTTTGGTAT 19061


  Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
  Number of letters in database: 430597
  Number of sequences in database:  1

Lambda     K      H
    1.37    0.711     1.31

Matrix: BLASTN matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Length of database: 430597