BLASTN 2.2.18 Mar-02-2008
Reference: Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig261
(943 letters)
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
1 sequences; 430597 total letters
Searching................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57013877|ref|NC_006581.1| Nicotiana tabacum mitochondrion ... 1598.3 0.0
>ref|NC_006581.1| Nicotiana tabacum mitochondrion, complete genome
Length = 430597
Score = 1598.27 bits (806.0), Expect = 0.0
Identities = 889/922 (96%)
Strand = Plus/Plus
Query: 3 GAATTCGAGAGAGGGCTTTCCTCTTATCTCTCAAATTATAGGCATTGAAGCGATCGAGAG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128061 GAATTCGAGAGAGGGCTTTCCTCTTATCTCTCAAATTATAGGCATTGAAGCGATCGAGAG 128120
Query: 63 AAAGTAAGAAAACTATTGCACACGCCCCCCATTCGCCCTTTACTAATATAATAGAAGGTA 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128121 AAAGTAAGAAAACTATTGCACACGCCCCCCATTCGCCCTTTACTAATATAATAGAAGGTA 128180
Query: 123 AGGCAAAAGCAAGAGTGAAACTACGAGCTAAAAGCAGGCGTGCCTCTCTTATAAGAGAAT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128181 AGGCAAAAGCAAGAGTGAAACTACGAGCTAAAAGCAGGCGTGCCTCTCTTATAAGAGAAT 128240
Query: 183 ATGATACCATCCCCCACTTTTGGCGCACTTGTTTGATGAGCTAAGCCTAAGCGCCATATA 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128241 ATGATACCATCCCCCACTTTTGGCGCACTTGTTTGATGAGCTAAGCCTAAGCGCCATATA 128300
Query: 243 AGTCAAAAGCTAGCCTGAGACCTAAAAAAGCAAGGTCGAAATCCATCCCTCTTTTTCCTG 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128301 AGTCAAAAGCTAGCCTGAGACCTAAAAAAGCAAGGTCGAAATCCATCCCTCTTTTTCCTG 128360
Query: 303 TATTTTACTAGTAGGGCTAATGAACGACCCTTTGATCTATGTCGTG-----TTCAGCCAG 357
||||| |||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 128361 TATTTGACTAGTAGGGCTAATGAACGACCCTTTGATCTATTAAGTGGAAAGTTCAGCCAG 128420
Query: 358 GTCTGATTAGAAGTTCCAAAATGAGTGGAGCGAGGGGCTTTAGAGGGAAAAAANNNNNNN 417
||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 128421 GTCTGATTAGAAGTTAAAAAATGAGTGGAGCGAGGGGCTTTAGAGGGAAAAAAGGGGGGG 128480
Query: 418 CGAGCTTTAATTGAAGTAGGGGCGGAGCTCCTCTCCTTACAGTCAAGTGGCTTTCACTCC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128481 CGAGCTTTAATTGAAGTAGGGGCGGAGCTCCTCTCCTTACAGTCAAGTGGCTTTCACTCC 128540
Query: 478 TCATAGAGAGTTAGAAAGCGTCAGTTCTCATAGCGAGGCTTAGGCCGACGGGGTAGGGCG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128541 TCATAGAGAGTTAGAAAGCGTCAGTTCTCATAGCGAGGCTTAGGCCGACGGGGTAGGGCG 128600
Query: 538 CGGCCCCCCAATTCTCAACCCCGACCTACACAAGTGGTTTTTTAACCCAAATTAGGAAAA 597
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 128601 CGGCCCCCCAATTCTCAACCCCGACCTACACAAGTGGTTTTTTAACCCACATTTTTAAAA 128660
Query: 598 GTTCTGTTAGGTTCTTAGTAGCAATCGGCGACCTTTTCTTCTTTTACTTCACATAGCTTT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128661 GTTCTGTTAGGTTCTTAGTAGCAATCGGCGACCTTTTCTTCTTTTACTTCACATAGCTTT 128720
Query: 658 TCGTCTCCTTGATGGCTGGAAGTTCTCCAAAAGTATGAAAAGCTGGAGGACTTTGTACCA 717
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128721 TCGTCTCCTTGATAGCTGGAAGTTCTCCAAAAGTATGAAAAGCTGGAGGACTTTGTACCA 128780
Query: 718 TCCATTCCGGTGTGGTTGGATTCTGTTCAACAGCCCAAGGACTTGGAGCACATCTTTTGT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128781 TCCATTCCGGTGTGGTTGGATTCTGTTCAACAGCCCAAGGACTTGGAGCACATCTTTTGT 128840
Query: 778 TCTTTCCACTGCTTGAAGTGATTGTTACGACCACGAAGAAACGACAAATCCCAACTACGG 837
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 128841 TCTTTCCACTGCTTGAAGTTATTGTTACGACCACGAAGAAACGACAAATCCCAACTACGG 128900
Query: 838 ATATATAANAGCCAAAACTGCTNAGGGNATTCCATCCAGCGTAANCATCTGGATNATCTG 897
|||||||| ||||||||||||| |||| |||||||||||||||| ||||||||| |||||
Sbjct: 128901 ATATATAAGAGCCAAAACTGCTAAGGGCATTCCATCCAGCGTAAGCATCTGGATAATCTG 128960
Query: 898 GNATGNGACGNGGNATACCCGA 919
| ||| |||| || ||||||||
Sbjct: 128961 GAATGCGACGTGGCATACCCGA 128982
Score = 75.8223 bits (38.0), Expect = 5.9879e-15
Identities = 38/38 (100%)
Strand = Plus/Minus
Query: 478 AGGAGTGAAAGCCACTTGACTGTAAGGAGAGGAGCTCC 441
||||||||||||||||||||||||||||||||||||||
Sbjct: 296938 AGGAGTGAAAGCCACTTGACTGTAAGGAGAGGAGCTCC 296975
Score = 73.84 bits (37.0), Expect = 2.36604e-14
Identities = 37/37 (100%)
Strand = Plus/Plus
Query: 442 GAGCTCCTCTCCTTACAGTCAAGTGGCTTTCACTCCT 478
|||||||||||||||||||||||||||||||||||||
Sbjct: 66437 GAGCTCCTCTCCTTACAGTCAAGTGGCTTTCACTCCT 66473
Score = 73.84 bits (37.0), Expect = 2.36604e-14
Identities = 37/37 (100%)
Strand = Plus/Plus
Query: 442 GAGCTCCTCTCCTTACAGTCAAGTGGCTTTCACTCCT 478
|||||||||||||||||||||||||||||||||||||
Sbjct: 84276 GAGCTCCTCTCCTTACAGTCAAGTGGCTTTCACTCCT 84312
Score = 73.84 bits (37.0), Expect = 2.36604e-14
Identities = 37/37 (100%)
Strand = Plus/Plus
Query: 442 GAGCTCCTCTCCTTACAGTCAAGTGGCTTTCACTCCT 478
|||||||||||||||||||||||||||||||||||||
Sbjct: 285776 GAGCTCCTCTCCTTACAGTCAAGTGGCTTTCACTCCT 285812
Score = 73.84 bits (37.0), Expect = 2.36604e-14
Identities = 37/37 (100%)
Strand = Plus/Plus
Query: 442 GAGCTCCTCTCCTTACAGTCAAGTGGCTTTCACTCCT 478
|||||||||||||||||||||||||||||||||||||
Sbjct: 398910 GAGCTCCTCTCCTTACAGTCAAGTGGCTTTCACTCCT 398946
Score = 73.84 bits (37.0), Expect = 2.36604e-14
Identities = 37/37 (100%)
Strand = Plus/Plus
Query: 442 GAGCTCCTCTCCTTACAGTCAAGTGGCTTTCACTCCT 478
|||||||||||||||||||||||||||||||||||||
Sbjct: 417187 GAGCTCCTCTCCTTACAGTCAAGTGGCTTTCACTCCT 417223
Score = 63.9282 bits (32.0), Expect = 2.2791e-11
Identities = 35/36 (97%)
Strand = Plus/Minus
Query: 479 GAGGAGTGAAAGCCACTTGACTGTAAGGAGAGGAGC 444
||||||||||||||||||||||||||||| ||||||
Sbjct: 174367 GAGGAGTGAAAGCCACTTGACTGTAAGGAAAGGAGC 174402
Score = 61.9459 bits (31.0), Expect = 9.00556e-11
Identities = 31/31 (100%)
Strand = Plus/Plus
Query: 97 GCCCTTTACTAATATAATAGAAGGTAAGGCA 127
|||||||||||||||||||||||||||||||
Sbjct: 335355 GCCCTTTACTAATATAATAGAAGGTAAGGCA 335385
Score = 59.9635 bits (30.0), Expect = 3.55843e-10
Identities = 30/30 (100%)
Strand = Plus/Plus
Query: 269 AAAGCAAGGTCGAAATCCATCCCTCTTTTT 298
||||||||||||||||||||||||||||||
Sbjct: 22154 AAAGCAAGGTCGAAATCCATCCCTCTTTTT 22183
Score = 54.0164 bits (27.0), Expect = 2.19534e-08
Identities = 30/31 (97%)
Strand = Plus/Plus
Query: 443 AGCTCCTCTCCTTACAGTCAAGTGGCTTTCA 473
|||||||||||||| ||||||||||||||||
Sbjct: 227969 AGCTCCTCTCCTTAGAGTCAAGTGGCTTTCA 227999
Score = 52.0341 bits (26.0), Expect = 8.67462e-08
Identities = 29/30 (97%)
Strand = Plus/Minus
Query: 472 GAAAGCCACTTGACTGTAAGGAGAGGAGCT 443
||||||||||||||| ||||||||||||||
Sbjct: 219077 GAAAGCCACTTGACTCTAAGGAGAGGAGCT 219106
Score = 52.0341 bits (26.0), Expect = 8.67462e-08
Identities = 29/30 (97%)
Strand = Plus/Plus
Query: 444 GCTCCTCTCCTTACAGTCAAGTGGCTTTCA 473
|||||||| |||||||||||||||||||||
Sbjct: 298333 GCTCCTCTGCTTACAGTCAAGTGGCTTTCA 298362
Score = 48.0694 bits (24.0), Expect = 1.3544e-06
Identities = 27/28 (96%)
Strand = Plus/Minus
Query: 473 TGAAAGCCACTTGACTGTAAGGAGAGGA 446
|||||||||||||||| |||||||||||
Sbjct: 230170 TGAAAGCCACTTGACTCTAAGGAGAGGA 230197
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
Number of letters in database: 430597
Number of sequences in database: 1
Lambda K H
1.37 0.711 1.31
Matrix: BLASTN matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Length of database: 430597