BLASTN 2.2.18 Mar-02-2008
Reference: Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig254
(760 letters)
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
1 sequences; 430597 total letters
Searching................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57013877|ref|NC_006581.1| Nicotiana tabacum mitochondrion ... 484.2 5.64811e-138
>ref|NC_006581.1| Nicotiana tabacum mitochondrion, complete genome
Length = 430597
Score = 484.187 bits (244.0), Expect = 5.64811e-138
Identities = 250/252 (99%)
Strand = Plus/Minus
Query: 271 CTACAGGGCCGGGGGAAGAAATAGGCGTGGGGAAGAGTCTGCAACAAAATCAATTGAATA 212
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48096 CTACAGGGCCGGGGGAACAAATAGGCGTGGGGAAGAGTCTGCAACAAAATCAATTGAATA 48155
Query: 211 GACAGAGAAGCCCGGTAAGCCTATCGATTCAAGCAAGTCCGACTAGTTTAGGCGCCGCCT 152
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48156 GACAGAGAAGTCCGGTAAGCCTATCGATTCAAGCAAGTCCGACTAGTTTAGGCGCCGCCT 48215
Query: 151 TCCAGACTTCTAAAAGCGGGTGGTTTTAAGTCCAGAGCCCTATTCTGGTTACAGAGTGCG 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48216 TCCAGACTTCTAAAAGCGGGTGGTTTTAAGTCCAGAGCCCTATTCTGGTTACAGAGTGCG 48275
Query: 91 GGTAGCCGACAAGTAGGTTAGCAAACTGGTGAATCAATAGGCTTTGCTCCTGCCTTCGCT 32
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48276 GGTAGCCGACAAGTAGGTTAGCAAACTGGTGAATCAATAGGCTTTGCTCCTGCCTTCGCT 48335
Query: 31 TCCAGGAGGAAT 20
||||||||||||
Sbjct: 48336 TCCAGGAGGAAT 48347
Score = 52.0341 bits (26.0), Expect = 6.96584e-08
Identities = 26/26 (100%)
Strand = Plus/Plus
Query: 570 GAAAGCCACTTGACTGTAAGGAAAGG 595
||||||||||||||||||||||||||
Sbjct: 174374 GAAAGCCACTTGACTGTAAGGAAAGG 174399
Score = 50.0517 bits (25.0), Expect = 2.75247e-07
Identities = 28/29 (97%)
Strand = Plus/Plus
Query: 563 AGGAGCGGAAAGCCACTTGACTGTAAGGA 591
|||||||||||||||||||||| ||||||
Sbjct: 219070 AGGAGCGGAAAGCCACTTGACTCTAAGGA 219098
Score = 48.0694 bits (24.0), Expect = 1.0876e-06
Identities = 27/28 (96%)
Strand = Plus/Minus
Query: 589 CTTACAGTCAAGTGGCTTTCCGCTCCTC 562
|||||||||||||||||||| |||||||
Sbjct: 298342 CTTACAGTCAAGTGGCTTTCAGCTCCTC 298369
Score = 44.1047 bits (22.0), Expect = 1.69811e-05
Identities = 22/22 (100%)
Strand = Plus/Minus
Query: 591 TCCTTACAGTCAAGTGGCTTTC 570
||||||||||||||||||||||
Sbjct: 66446 TCCTTACAGTCAAGTGGCTTTC 66467
Score = 44.1047 bits (22.0), Expect = 1.69811e-05
Identities = 22/22 (100%)
Strand = Plus/Minus
Query: 591 TCCTTACAGTCAAGTGGCTTTC 570
||||||||||||||||||||||
Sbjct: 84285 TCCTTACAGTCAAGTGGCTTTC 84306
Score = 44.1047 bits (22.0), Expect = 1.69811e-05
Identities = 22/22 (100%)
Strand = Plus/Minus
Query: 591 TCCTTACAGTCAAGTGGCTTTC 570
||||||||||||||||||||||
Sbjct: 128514 TCCTTACAGTCAAGTGGCTTTC 128535
Score = 44.1047 bits (22.0), Expect = 1.69811e-05
Identities = 28/30 (93%)
Strand = Plus/Minus
Query: 591 TCCTTACAGTCAAGTGGCTTTCCGCTCCTC 562
|||||| ||||||||||||||| |||||||
Sbjct: 227977 TCCTTAGAGTCAAGTGGCTTTCAGCTCCTC 228006
Score = 44.1047 bits (22.0), Expect = 1.69811e-05
Identities = 28/30 (93%)
Strand = Plus/Plus
Query: 562 GAGGAGCGGAAAGCCACTTGACTGTAAGGA 591
||||||| ||||||||||||||| ||||||
Sbjct: 230163 GAGGAGCTGAAAGCCACTTGACTCTAAGGA 230192
Score = 44.1047 bits (22.0), Expect = 1.69811e-05
Identities = 22/22 (100%)
Strand = Plus/Minus
Query: 591 TCCTTACAGTCAAGTGGCTTTC 570
||||||||||||||||||||||
Sbjct: 285785 TCCTTACAGTCAAGTGGCTTTC 285806
Score = 44.1047 bits (22.0), Expect = 1.69811e-05
Identities = 22/22 (100%)
Strand = Plus/Plus
Query: 570 GAAAGCCACTTGACTGTAAGGA 591
||||||||||||||||||||||
Sbjct: 296944 GAAAGCCACTTGACTGTAAGGA 296965
Score = 44.1047 bits (22.0), Expect = 1.69811e-05
Identities = 22/22 (100%)
Strand = Plus/Minus
Query: 591 TCCTTACAGTCAAGTGGCTTTC 570
||||||||||||||||||||||
Sbjct: 398919 TCCTTACAGTCAAGTGGCTTTC 398940
Score = 44.1047 bits (22.0), Expect = 1.69811e-05
Identities = 22/22 (100%)
Strand = Plus/Minus
Query: 591 TCCTTACAGTCAAGTGGCTTTC 570
||||||||||||||||||||||
Sbjct: 417196 TCCTTACAGTCAAGTGGCTTTC 417217
Score = 42.1223 bits (21.0), Expect = 6.70987e-05
Identities = 27/29 (93%)
Strand = Plus/Plus
Query: 234 ACTCTTCCCCACGCCTATTTCTTCCCCCG 262
|||||||||||||||||||| ||| ||||
Sbjct: 315578 ACTCTTCCCCACGCCTATTTGTTCACCCG 315606
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
Number of letters in database: 430597
Number of sequences in database: 1
Lambda K H
1.37 0.711 1.31
Matrix: BLASTN matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Length of database: 430597