BLASTN 2.2.18 Mar-02-2008
Reference: Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig216
(1804 letters)
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
1 sequences; 430597 total letters
Searching................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57013877|ref|NC_006581.1| Nicotiana tabacum mitochondrion ... 2163.2 0.0
>ref|NC_006581.1| Nicotiana tabacum mitochondrion, complete genome
Length = 430597
Score = 2163.24 bits (1091.0), Expect = 0.0
Identities = 1212/1261 (96%)
Strand = Plus/Minus
Query: 1264 CCTTTCTTTCTACTAGTTCTTACATAAGCAATTTGCAGGAAGTAAACGAAGTCTTTCCTT 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327749 CCTTTCTTTCTACTAGTTCTTACATAAGCAATTTGCAGGAAGTAAACGAAGTCTTTCCTT 327808
Query: 1204 CCGAAATCCACTCCTGAAGTCACGTCTTTCAGTACTGGGACTGAAGTAAAGTACTTGAGA 1145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 327809 CCGAAATCCACTCCTGAAGTCACGTCTTTCAGTACTGGGACTGAAGTAAAGTACTTTCGA 327868
Query: 1144 GTTGCTCTTTGCCCAAAGCCCTCCTTCCGACTTAGTTAGAAATACCAACTCTAAATAGCT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327869 GTTGCTCTTTGCCCAAAGCCCTCCTTCCGACTTAGTTAGAAATACCAACTCTAAATAGCT 327928
Query: 1084 TTAGCATTTCTTGAGTTGAAAAGGTATTTCTAGATTCTAGAGCTCAGGGGAAGGTTTGGA 1025
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 327929 TTAGCATTTCTTGAGTTGAAAAGGTATTTATAGATTCTAGAGCTCAGGGGAAGGTTTGGA 327988
Query: 1024 ACCCTAGTAGCAGAATGGAATCAGTTTACCGGGCTGACTTCCATGCCAACACGAGTAGTT 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327989 ACCCTAGTAGCAGAATGGAATCAGTTTACCGGGCTGACTTCCATGCCAACACGAGTAGTT 328048
Query: 964 TAACTCATCACTACCTCGTAAGGGCGTTGAGAATTGNNNNNNNNNNNNNNGCTAAAAACT 905
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 328049 TAACTCATCACTACCTCGTAAGGGCGTTGAGAATTGTTTTTGCTTTTTTTGCTAAAAACT 328108
Query: 904 TTTGAAAAAGTCTTCAAAGAGCCTTTGCATAGTTTACGAATTCTGCTTAGTAGGGACCTA 845
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328109 TTTTCAAAAGTATTCAAAGAGCCTTTGCATAGTTTACGAATTCTGCTTAGTAGGGACCTA 328168
Query: 844 AACACAGGAATTTCTTTTCTCAGAGTCAGACCACGCCTTATGACGAAAGGGGGAGAAAGG 785
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328169 AACACAGGAATTTTTTTTCTCAGAGTCAGACCACGCCTTATGACGAAAGGGGGAGAAAGG 328228
Query: 784 ACGGATCACCTGTCGATCTGTGATCAAAGAAAACTATACCTGAAGAATGGGATACAGATT 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328229 ACGGATCACCTGTCGATCTGTGATCAAAGAAAACTATACCTGAAGAATGGGATACAGATT 328288
Query: 724 GACAAGCACAAAAGGGTAGGCTTGGCTATTAATCTACGCTCATTGATGAGACGGCGACAT 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328289 GACAAGCACAAAAGGGTAGGCTTGGCTATTAATCTACGCTCATTGATGAGACGGCGACAT 328348
Query: 664 AGAGAAGAAAGTATACCCTTTGTCACCCCCCTTGTCACTTAAAAGTAAAGAAGAGATACA 605
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 328349 AGAGAAGAAAGTATACCCTTTGTCA-CCCCCTTGTCACTTAAAAGTAAAGAAGAGATACA 328407
Query: 604 CACTTTGGAA-------TTGGTGGGATTTAGGATGGAATCGAATAGCGAATGCACTTGCG 552
|||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328408 CACTTTGGAATCAAAATTTGGTGGGATTTAGGATGGAATCGAATAGCGAATGCACTTGCG 328467
Query: 551 GTTAAGACAGGTCCTGCATCTCCTACCTAATGCAATTGACCGACCCGCCATTTCTTTCCT 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328468 GTTAAGACAGGTCCTGCATCTCCTACCTAATGCAATTGACCGACCCGCCATTTCTTTCCT 328527
Query: 491 TCAATAATGCCTTCGCTTCACTTCAAGACGCTATTTACCAAGGAAAGACTACCNNNNNNN 432
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328528 TCAATAATGCCTTCGCTTCACTTCAAGACGCTATTTACCAAGGAAAGACTACC--TTTTT 328585
Query: 431 NNNGAATGGAAGAAGCAGAAGGGGTGAACGAGCGCTGCGGTAACGAGCCGTAAGAAAGAT 372
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328586 TTTGAATGGAAGAAGCCGAAGGGGTGAACGAGCGCTGCGGTAACGAGCCGTAAGAAAGAT 328645
Query: 371 GAGCAGAGCATTCCTTCCGCCGGCCTTTATAGGAGTAGGGGAGCGTGGTGAGATAGATAG 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328646 GAGCAGAGCATTCCTTCCGCCGGCCTTTATAGGAGTAGGGGAGCGTGGTGAGATAGATAG 328705
Query: 311 ACGTCCAATCCTGCAGCAGCTAGTTGCTCGGCCTTAGTCTTGGGCTGATCTCAGACTTCA 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328706 ACGTCCAATCCTGCAGCAGCTAGTTGCTCGGCCTTAGTCTTGGGCTGATCTCAGACTTCA 328765
Query: 251 ATCAACCCCTTCGTACTTCGATCCAATCAATCGATCGATCAAGAGGCTAATCTCTTTTGT 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328766 ATCAACCCCTTCGTACTTCGATCCAATCAATCGATCGATCAAGAGGCTAATCTCTTTTGT 328825
Query: 191 TTGGGCCGGTAGCTAAAAGAAAGTCCTCGCTTTCTCTTGAACAAGGGAAGGGCAGCATAG 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328826 TTGGGCCGGTAGCTAAAAGAAAGTCCTCGCTTTCTCTTGAACAAGGGAAGGGCAGCATAG 328885
Query: 131 CATTAGCTTCAATTGAACAAGCTCAACCTTGNNNNNNNNNGGTGGTAGGCCGACGTTGAA 72
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 328886 CATTAGCTTCAATTGAACAAGCTCAACCTTGAAAAAAAAAGGTGGTAGGCCGACGTTGAA 328945
Query: 71 CGCTTCAACTTGGCCACTGAAGAAGGCGAAGGCTGGGCGAGAGACTAGGCCAACTTACTG 12
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328946 CGCTTCAACTTGGCCACTGAAGAAGGCGAAGGCTGGGCGAGAGACTAGGCCAACTTACTG 329005
Query: 11 C 11
|
Sbjct: 329006 C 329009
Score = 787.487 bits (397.0), Expect = 0.0
Identities = 460/485 (95%)
Strand = Plus/Minus
Query: 1790 CTTTCNNAAGAGGGAANNATCNNTCNNTCATGCAGCAGAGCNGTNTTCATCTAACTAGAA 1731
||||| ||||||||| ||| || |||||||||||||| || |||||||||||||||
Sbjct: 132892 CTTTCATAAGAGGGAAAGATCACTCCGTCATGCAGCAGAGCAGTGTTCATCTAACTAGAA 132951
Query: 1730 ATTTCATAAGAGAAGAAGAATCGTAGCGTAGGGTCGACATAANCAATCGGTTAAAATAGT 1671
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 132952 ATTTCATAAGAGAAGAAGAATCGTAGCGTAGGGTCGACATAAACAATCGGTTAAAATAGT 133011
Query: 1670 CTAATGAGAAAGCATCTGTTCACGTTCGTAGTTGCAATAAGTTTTCTTTTTTGTTTCGAG 1611
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 133012 CTAATGAGAAAGCATCTGTTCACGTTCGTAGTTGCAATAAGTTTTCTTTTTTTAATCGAG 133071
Query: 1610 ATTGGCTTGGTCTTCAGTCTACCCTAATGAAACCTAAAATCTCACTCCCTCGCTTTCTCC 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133072 ATTGGCTTGGTCTTCAGTCTACCCTAATGAAACCTAAAATCTCACTCCCTCGCTTTCTCC 133131
Query: 1550 TTCTGATAGACTAGCTTGCGCATCTTCTCTTTGGCACTCATCCTTGGCTTGGGGAGTGCT 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133132 TTCTGATAGACTAGCTTGCGCATCTTCTCTTTGGCACTCATCCTTGGCTTGGGGAGTGCT 133191
Query: 1490 CTCTCTCTTCTGTGTCAGCGAAGGAAGGA------TAAGAGCAATCGGCCGAATGATTGT 1437
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 133192 CTCTCTCTTCTGTGTCAGCGAAGGAAGGATAAGAGTAAGAGCAATCGGCCGAATGATTGT 133251
Query: 1436 TATTCCACTTACGGTTACAGTGCCTCTATCGAAGCAGAACAAGTCTAATACTCCAGCCCC 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133252 TATTCCACTTACGGTTACAGTGCCTCTATCGAAGCAGAACAAGTCTAATACTCCAGCCCT 133311
Query: 1376 GGTTTTCGGGGATTCCATTTCGATCTAAGCCCGGAAACCCATATCTTTATATACGAAATT 1317
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 133312 GGTTTTCGGGGATGTAATTTCGATCTAAACCCGGAAACCCATATCTTTATATACGAAATT 133371
Query: 1316 ACTTC 1312
|||||
Sbjct: 133372 ACTTC 133376
Score = 89.6988 bits (45.0), Expect = 7.66711e-19
Identities = 48/49 (98%)
Strand = Plus/Plus
Query: 1312 GAAGTAATTTCGTATATAAAGATATGGGTTTCCGGGCTTAGATCGAAAT 1360
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 145442 GAAGTAATTTCGTATATAAAGATATGGGTTTCCGGGTTTAGATCGAAAT 145490
Score = 61.9459 bits (31.0), Expect = 1.73422e-10
Identities = 31/31 (100%)
Strand = Plus/Minus
Query: 963 AACTCATCACTACCTCGTAAGGGCGTTGAGA 933
|||||||||||||||||||||||||||||||
Sbjct: 201350 AACTCATCACTACCTCGTAAGGGCGTTGAGA 201380
Score = 46.087 bits (23.0), Expect = 1.0306e-05
Identities = 23/23 (100%)
Strand = Plus/Plus
Query: 1273 GCCACTTGACTGTAAGGAAAGGA 1295
|||||||||||||||||||||||
Sbjct: 174378 GCCACTTGACTGTAAGGAAAGGA 174400
Score = 44.1047 bits (22.0), Expect = 4.07227e-05
Identities = 25/26 (96%)
Strand = Plus/Plus
Query: 1716 CTTCTCTTATGAAATTTCTAGTTAGA 1741
|||||||||| |||||||||||||||
Sbjct: 8164 CTTCTCTTATCAAATTTCTAGTTAGA 8189
Score = 44.1047 bits (22.0), Expect = 4.07227e-05
Identities = 22/22 (100%)
Strand = Plus/Minus
Query: 1735 TAGAAATTTCATAAGAGAAGAA 1714
||||||||||||||||||||||
Sbjct: 10144 TAGAAATTTCATAAGAGAAGAA 10165
Score = 44.1047 bits (22.0), Expect = 4.07227e-05
Identities = 22/22 (100%)
Strand = Plus/Plus
Query: 793 CCCCTTTCGTCATAAGGCGTGG 814
||||||||||||||||||||||
Sbjct: 276205 CCCCTTTCGTCATAAGGCGTGG 276226
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
Number of letters in database: 430597
Number of sequences in database: 1
Lambda K H
1.37 0.711 1.31
Matrix: BLASTN matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Length of database: 430597