BLASTN 2.2.18 Mar-02-2008
Reference: Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig180
(885 letters)
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
1 sequences; 430597 total letters
Searching................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57013877|ref|NC_006581.1| Nicotiana tabacum mitochondrion ... 896.5 0.0
>ref|NC_006581.1| Nicotiana tabacum mitochondrion, complete genome
Length = 430597
Score = 896.517 bits (452.0), Expect = 0.0
Identities = 535/565 (95%)
Strand = Plus/Minus
Query: 599 CCATCTCCTTGACTTTGTTCACATTCAGTAGCAGCTTGCTGGTGTCCTTTCAGGTCAGGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268996 CCATCTCCTTGACTTTGTTCACATTCAGTAGCAGCTTGCTGGTGTCCTTTCAGGTCAGGA 269055
Query: 539 ACTCCTGCAATAGGCAGCCAGCCTATTGGAAAAAGACTACTCTCATCCCTCTCCTTTCAG 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 269056 ACTCCTGCAATAGGCAGCTAGCCTATTGGAAAAAGACTACTCTCATCCCTCTCC------ 269109
Query: 479 TCGAGTGAGCTAANNNNNNN---CGTGCTTCTTAAGTCGACGTTGACCTGTATATAAGTC 423
|||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 269110 -CGAGGTAGCTACTTTTTTTTTTCGTGCTTCTTAAGTCGATGTTGACCTGTATATAAGTC 269168
Query: 422 AGATGTTGGAAAGGGAAGCCCCCATAATATAAGCACTCTTTCAGTCAAGTAATGCCTTTA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269169 AGATGTTGGAAAGGGAAGCCCCCATAATATAAGCACTCTTTCAGTCAAGTAATGCCTTTA 269228
Query: 362 GAGCCTATAGTATAGCTGAGTAGCTAAGAGCTTCTGGGAATTGAAAAACGCAGGAATCGA 303
||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||
Sbjct: 269229 GAGCCTATAGTATAGCTGAGTAGCTAAGAGCTTCTGGTAATTTAAAAACGTAGGAATCGA 269288
Query: 302 CTTGTTTTGCGTTAATGGGGCTTTGAGGGACGTCTTCTCTTTCCCTTATCAAGCAAGTCA 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269289 CTTCTTTTGCGTTAATGGGGCTTTGAGGGACGTCTTCTCTTTCCCTTATCAAGCAAGTCA 269348
Query: 242 CACCTAATCGCCCTTGATGCCATCTTGATAACTGGACTGAATGTCTCATCATAGTCTATA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269349 CACCTAATCGCCCTTGATGCCATCTTGATAACTGGACTGAATGTCTCATCATAGTCTATA 269408
Query: 182 CCCTATTGCTGGTTGTAGCCTTTGGCTACCACGCGAGCCTTGTAGCGATCAATAGTCCCA 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269409 CCCTATTGCTGGTTGTAGCCTTTGGCTACCACGCGAGCCTTGTAGCGATCAATAGTCCCA 269468
Query: 122 TCAGACTTTGACTTTCTCTTGTATAACCACTTGCGAGCCGATACAAAAATTTCGAAATCA 63
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 269469 TCAGACTTTGACTTTCTCTTGTATAACCACTTGCGAGCCGATACACAAATTTATAAATCA 269528
Query: 62 AAATTTCGCAGGAAAATGGGATGAA 38
|||||| ||||||||||||||||||
Sbjct: 269529 AAATTTAGCAGGAAAATGGGATGAA 269560
Score = 48.0694 bits (24.0), Expect = 1.26984e-06
Identities = 24/24 (100%)
Strand = Plus/Minus
Query: 497 TCATCCCTCTCCTTTCAGTCGAGT 474
||||||||||||||||||||||||
Sbjct: 116192 TCATCCCTCTCCTTTCAGTCGAGT 116215
Score = 46.087 bits (23.0), Expect = 5.01761e-06
Identities = 23/23 (100%)
Strand = Plus/Plus
Query: 472 TCACTCGACTGAAAGGAGAGGGA 494
|||||||||||||||||||||||
Sbjct: 87228 TCACTCGACTGAAAGGAGAGGGA 87250
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
Number of letters in database: 430597
Number of sequences in database: 1
Lambda K H
1.37 0.711 1.31
Matrix: BLASTN matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Length of database: 430597