BLASTN 2.2.18 Mar-02-2008
Reference: Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig140
(974 letters)
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
1 sequences; 430597 total letters
Searching................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57013877|ref|NC_006581.1| Nicotiana tabacum mitochondrion ... 355.3 4.46743e-99
>ref|NC_006581.1| Nicotiana tabacum mitochondrion, complete genome
Length = 430597
Score = 355.334 bits (179.0), Expect = 4.46743e-99
Identities = 280/314 (89%)
Strand = Plus/Minus
Query: 971 CGAAAGGCGCTTTT-CTCACTATCTATTCAATTTAAA----ATGCTCACTTATGAAATCA 917
|||||||||||||| |||||||||||||||||| || |||||||||||||||||||
Sbjct: 406694 CGAAAGGCGCTTTTTCTCACTATCTATTCAATTCCAACTTCATGCTCACTTATGAAATCA 406753
Query: 916 AGCTAATAAGGCCAAAAACAGAGCATGGAGTCCACTGGCATGAGAATCAAGCGAAGTAGA 857
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 406754 AGCTAATAAGGCCAAAAACAGAGCATGAAGTCCACTGGCATGAGAATCAAGCGAAGTAGA 406813
Query: 856 GACATAAGCGGATCCAAAGAAAAGAAGCAAGACGACTACTTCCATTCCTCTCCTTAGACC 797
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406814 GACATAAGCAGATCCAAAGAAAAGAAGCAAGACGACTACTTCCATTCCTCTCCTTAGACC 406873
Query: 796 GACAGTACTACAAGAAAGAAATAAGACAGAAATAAGGCGATTATTACCTAAAAGAATAAT 737
||||||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct: 406874 GACAGTACTAC-----------AAGACAGAAATAAGGCGATTATTACCTAATATAATAAT 406922
Query: 736 GTGAATTAGAATAATAATACCTCACAAAGAAGGTAGATGAATTGCTTAGCCAAGACTATC 677
||||| |||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 406923 TAGAATTTTCATAATAATACCTCACAAACAAGGTAGATGAATT-----GCCAAGACTATC 406977
Query: 676 TCGACCTTAGCCTT 663
||||||||| ||||
Sbjct: 406978 TCGACCTTACCCTT 407007
Score = 274.058 bits (138.0), Expect = 1.30836e-74
Identities = 188/204 (92%)
Strand = Plus/Minus
Query: 247 CCTTTCTGGTTTGCTTTAGCTTTTCCAGCATTCGCCGCCCCTTCAATAGCCTTTTGCGCG 188
||||||||| ||||||| |||||||||||||||||| |||||| ||||||||||||||
Sbjct: 364384 CCTTTCTGGGTTGCTTTTGCTTTTCCAGCATTCGCC---CCTTCAGTAGCCTTTTGCGCG 364440
Query: 187 GATCCTGCACCTGCGCTTCCAGACCTCAACGAGATTCCAGTAGGCCTTTCTCCTGCGGAA 128
| |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 364441 GGTCCTGCTCCTGCGCTTCCTGACCTCAACGAGATTCCAGTAGGCCTTTCGCCTGCTGAA 364500
Query: 127 ATAGCCCAATTGCATCGGGAGACTGAAGAGAAGGCCGCCCAGTGTGGCAGGCTCTTGCAA 68
||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 364501 ATAGCGCAATTGCATCGGGAGACTGAAGAGAATGCCGCCCAGTGTGACAGGCTCTTGCAA 364560
Query: 67 GAAATCTGTGGGCAGGCAAAAGAA 44
|||||||||| |||||||| ||||
Sbjct: 364561 GAAATCTGTGTGCAGGCAAGAGAA 364587
Score = 69.8753 bits (35.0), Expect = 3.81745e-13
Identities = 41/43 (95%)
Strand = Plus/Plus
Query: 308 ATTATGAAAAGAAAAATCTTACTAAAGAGAGAAGTCTATTAGA 350
||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7861 ATTATGAAAAGAAAAATCTATCTAAAGAGAGAAGTCTATTAGA 7903
Score = 54.0164 bits (27.0), Expect = 2.2686e-08
Identities = 39/43 (91%)
Strand = Plus/Minus
Query: 622 ATCACTTCACTCCAGCGCCTCCTCAGTCTTCTTGCATCTTTCC 580
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 212825 ATCACTTCACTCCAGCGCCTGTAGAGTCTTCTTGCATCTTTCC 212867
Score = 48.0694 bits (24.0), Expect = 1.39959e-06
Identities = 36/40 (90%)
Strand = Plus/Plus
Query: 755 AATCGCCTTATTTCTGTCTTATTTCTTTCTTGTAGTACTG 794
||||| ||||||||||||||| ||||||||||||||||
Sbjct: 267946 AATCGACTTATTTCTGTCTTACAGCTTTCTTGTAGTACTG 267985
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
Number of letters in database: 430597
Number of sequences in database: 1
Lambda K H
1.37 0.711 1.31
Matrix: BLASTN matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Length of database: 430597