BLASTN 2.2.18 Mar-02-2008
Reference: Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig11
(1078 letters)
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
1 sequences; 430597 total letters
Searching................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57013877|ref|NC_006581.1| Nicotiana tabacum mitochondrion ... 1762.8 0.0
>ref|NC_006581.1| Nicotiana tabacum mitochondrion, complete genome
Length = 430597
Score = 1762.81 bits (889.0), Expect = 0.0
Identities = 999/1041 (96%)
Strand = Plus/Minus
Query: 1040 GAGTTATTTCNCGNAATAACNCTNGTATATATTGAGCTCGTAATGGTNCCTCGCAATTCA 981
|||||||||| || |||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 377918 GAGTTATTTCACGGAATAACACTCGTATATATTGAGCTCGTAATGGTACCTCGCAATTCA 377977
Query: 980 AAAGTCTCTCTACGGCTGAAGAATGGGCGTGTTCTTGGGCCATCATAGAAACATAGATAG 921
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 377978 AAAGTCTCTCTACGGCTGAAGAATGAGCGTGTTCTTGGGCCATCATAGAAACATAGATAG 378037
Query: 920 GGTCGACGACGGAACGAAGAACGAAACTTTACGACAGCTTTTTCGTAGACGTTCACTTGC 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378038 GGTCGACGACGGAACGAAGAACGAAACTTTACGACAGCTTTTTCGTAGACGTTCACTTGC 378097
Query: 860 ATCACATACACAAGTGCTCTCTGAACCGTGCAATAAGGTCACCCATAACACGGCTCTCCC 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378098 ATCACATACACAAGTGCTCTCTGAACCGTGCAATAAGGTCACCCATAACACGGCTCTCCC 378157
Query: 800 ACTTGAGTTATCTTAGCCCCAGGCCATGCTATTCAATAATATTGGAAAAATGGCAGCCTA 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 378158 ACTTGAGTTATCTTAGCCCCAGGCCATGCTATTCAATAATATTGGAAAAATGGCAGCGTA 378217
Query: 740 AGGTAACAACTAGTATGGAAAGCTGGTCGCCTTTGGAAGCCTTCGCCGGTAACCAAAGCG 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378218 AGGTAACAACTAGTATGGAAAGCTGGTCGCCTTTGGAAGCCTTCGCCGGTAACCAAAGCG 378277
Query: 680 TATCGTTCCCGCAACCACTTTGGTACTTTGTTTATAGCTTTTTTAAGTTATGCAATAGAA 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378278 TATCGTTCCCGCAACCACTTTGGTACTTTGTTTATAGCTTTTTTAAGTTATGCAATAGAA 378337
Query: 620 NNNNNNNCTTGCGCTTGAATTGAAGTAGCGCCTTTGGAATATGAGTAGGGCTCCTAAGTG 561
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378338 GGGGGGGCTTGCGCTTGAATTGAAGTAGCGCCTTTGGAATATGAGTAGGGCTCCTAAGTG 378397
Query: 560 GCGCGTTCGTGGAGGCAAACCGAAGGAAGAGCAAAAGGAAGGTTGGGTGCTTGTGGGGCG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378398 GCGCGTTCGTGGAGGCAAACCGAAGGAAGAGCAAAAGGAAGGTTGGGTGCTTGTGGGGCG 378457
Query: 500 CGGCCATCCGGCCTCGAATAGGAGGGGGCAACGCTCTGGATCCTCCCTGCTTGCAGAAAT 441
|| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378458 AGGAAA---AACCTCGAATAGGAGGGGGCAACGCTCTGGATCCTCCCTGCTTGCAGAAAT 378514
Query: 440 GAATGGATCAGAAAGGGGCTTGGTTCTCTATTTCCGGGCGGGGGGTGAAGGCCATAAGAG 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378515 GAATGGATCAGAAAGGGGCTTGGTTCTCTATTTCCGGGCGGGGGGTGAAGGCCATAAGAG 378574
Query: 380 AAGATTGCCCTACCGGTAAGGAAGAGGGGAAAAAGGTGCTGTCATCTATCTCGACCAGTT 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378575 AAGATTGCCCTACCGGTAAGGAAGAGGGGAAAAAGGTGCTGTCATCTATCTCGACCAGTT 378634
Query: 320 TCCCGAGGCGTTGGAAATCCAGACCGGCTCAGAGAATAACTCTCGCTATTTAGCCCTTCG 261
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 378635 TCCCGAGGCGTTGGAAATCCAGACCGGCTCAGAGAATCACTCTCGCTATTTAGCCCTTCG 378694
Query: 260 TTCCGCCAACAAAGAAGTCATCCTTGACGATTTCCCATTCCTTCCCTGCCGAGCCGCCTC 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378695 TTCCGCCAACAAAGAAGTCATCCTTGACGATTTCCCATTCCTTCCCTGCCGAGCCGCCTC 378754
Query: 200 TCTTCGCCATTCGATGCTTCCGCCTCCCCTTTCTATAACATACCCAGGCGCCCTCCTTTC 141
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 378755 TCTTCGCCATTCGATGCTTCCGCCTTCCCTTTCTATAACATACCCAGGCGCCCTCCTTTC 378814
Query: 140 CAATCACTAAGNNNNNNNNNNGACCAATCAAAGCCCTATCTAAGTAAAGCTTCGTCTGTT 81
||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 378815 CAATCACTAAGAAAAAAAAAATCCCAATCAAAGCCCTATCTAAGTAAAGCTTCGTCTGTT 378874
Query: 80 ATTTTTCCNGGCCCCAGGGGAGTTTATTCGA-CCATTCCCCAGTCTCCCGCACTGCTCNN 22
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 378875 ATTTTTCC-GGCCCCAGGGGAGTTTATTCGACCCATTCCCCAGTCTCCCGCACTGCTCAA 378933
Query: 21 GTAAGTGTGCGACTNCGNATG 1
|||||||||||||| || |||
Sbjct: 378934 GTAAGTGTGCGACTCCGTATG 378958
Score = 121.416 bits (61.0), Expect = 1.29121e-28
Identities = 64/65 (98%)
Strand = Plus/Plus
Query: 854 ATGTGATGCAAGTGAACGTCTACGAAAAAGCTGTCGTAAAGTTTCGTTCTTCGTTCCGTC 913
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 192013 ATGTGATGCAAGTGAACGTTTACGAAAAAGCTGTCGTAAAGTTTCGTTCTTCGTTCCGTC 192072
Query: 914 GTCGA 918
|||||
Sbjct: 192073 GTCGA 192077
Score = 42.1223 bits (21.0), Expect = 9.57011e-05
Identities = 21/21 (100%)
Strand = Plus/Plus
Query: 898 CGTTCTTCGTTCCGTCGTCGA 918
|||||||||||||||||||||
Sbjct: 86308 CGTTCTTCGTTCCGTCGTCGA 86328
Score = 42.1223 bits (21.0), Expect = 9.57011e-05
Identities = 21/21 (100%)
Strand = Plus/Plus
Query: 898 CGTTCTTCGTTCCGTCGTCGA 918
|||||||||||||||||||||
Sbjct: 287808 CGTTCTTCGTTCCGTCGTCGA 287828
Score = 42.1223 bits (21.0), Expect = 9.57011e-05
Identities = 21/21 (100%)
Strand = Plus/Minus
Query: 110 AAGCCCTATCTAAGTAAAGCT 90
|||||||||||||||||||||
Sbjct: 335389 AAGCCCTATCTAAGTAAAGCT 335409
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
Number of letters in database: 430597
Number of sequences in database: 1
Lambda K H
1.37 0.711 1.31
Matrix: BLASTN matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Length of database: 430597