BLASTN 2.2.18 Mar-02-2008
Reference: Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig108
(1615 letters)
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
1 sequences; 430597 total letters
Searching................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57013877|ref|NC_006581.1| Nicotiana tabacum mitochondrion ... 1090.8 0.0
>ref|NC_006581.1| Nicotiana tabacum mitochondrion, complete genome
Length = 430597
Score = 1090.79 bits (550.0), Expect = 0.0
Identities = 599/615 (97%)
Strand = Plus/Minus
Query: 615 GCTCCTTTTGCCCAGGGGACATCGTCGGAGAACAATGTCGGGGACAGGGTGAGAGCCTCC 556
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 330915 GCTCCTTTCGCCCAGGGGACATCGTCGGAGAACAATGTCGGGGACAGGGTGAGAACCTTC 330974
Query: 555 CGTTGGTTACGCCCTTTAAGTGTCGGTTCTTCCATATTTAGATATGGAGATAGATCCATA 496
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 330975 CGTTGGTTACGCCCTTGTTGTGTCGGTTCTTCCATATTTAGATATGGAGATAGATCCATA 331034
Query: 495 TAGAGATCTATATCTTTCTATCGATAAATAGATCTATTGAGAAATGGATATTGATCTGGT 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331035 TAGAGATCTATATCTTTCTATCGATAAATAGATCTATTGAGAAATGGATATTGATCTGGT 331094
Query: 435 TTCAAGATCTATGAACAAGAGAGATCCCTAAATATCCATTTGAGAAAATAGATGAATAGA 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331095 TTCAAGATCTATGAACAAGAGAGATCCCTAAATATCCATTTGAGAAAATAGATGAATAGA 331154
Query: 375 TAGGGCGAAGCCAGCTGAAGGAAGGTCGCGTTAGCGCCCCCTATTTCACTAAAGCAAGAA 316
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 331155 TAGGGCGAAGCCTGCTGAAGGAAGGTCGCGTTAGCGCCCCTTATTTCACTAAAGCAAGAA 331214
Query: 315 GGGAGAAAGTTGACTTTGAGAAAGAAGGGCTTCTATTTAGATTAGTTTCTTAGTAAAAGA 256
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331215 GGGAGAAAGTTTACTTTGAGAAAGAAGGGCTTCTATTTAGATTAGTTTCTTAGTAAAAGA 331274
Query: 255 TAAGGCAAGAAGCAAGGGCGTAGCAGCTGCGCGAAAGCCGTTGCGCCTTAGCGCACCCCT 196
||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct: 331275 TAAGGCAAGAAGCAAGGGCGTAGCAGCTGCGCGAA----GTTGCGCCTTAGCGCATCCGT 331330
Query: 195 TTTCTTGCTCGTTAGCGCCCCCCTACCCCTATTATTTAGATTATAGTCATAAAGGAACTA 136
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 331331 TTTCTTGCTCGTTAGCGCCCCCCTACCCCTATTATTTATATTATAGTCATAAAGGAACTA 331390
Query: 135 AAGGAAATTTGACAACCTTACTAATAGAAAGGGGATGCGCTCAAGCATGCGAAGAAAGCT 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331391 AAGGAAATTTGACAACCTTACTAATAGAAAGGGGATGCGCTCAAGCATGCGAAGAAAGCT 331450
Query: 75 CGAAGAGCTTCTCTTATATTATAGAAAGGTTTGTAGAAAGGGGATTCTTCAAATATCCCA 16
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331451 CGAAGAGCTTCTCTTATATTATAGAAAGGTTTGTAGAAAGGGGATTCTTCAAATATCCCA 331510
Query: 15 TGTTGTAGGGGCTTC 1
|||||||||||||||
Sbjct: 331511 TGTTGTAGGGGCTTC 331529
Score = 196.746 bits (99.0), Expect = 4.09023e-51
Identities = 129/139 (93%)
Strand = Plus/Minus
Query: 770 CCGCTCCTCTACAACTACCTTTCGCCCAACATGATCACGAACGAAGACAGAGAATTGCGT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330790 CCGCTCCTCTACAACTACCTTTCGCCCAACATGATCACGAACGAAGACAGAGAATTGCGT 330849
Query: 710 AGATAGGAGGACGAAACGAACCAACCCACTTGTCCTGATCGGAA-----GAAGAAAGAAA 656
|||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 330850 AGATAGGAGGACGAAACGAA-----CCACTTGTCCTGATCGGAACGATTGAAGAAAGAAA 330904
Query: 655 GAGAATGGTGGCTCCTTTC 637
|||||||||||||||||||
Sbjct: 330905 GAGAATGGTGGCTCCTTTC 330928
Score = 113.487 bits (57.0), Expect = 4.73331e-26
Identities = 76/82 (93%)
Strand = Plus/Plus
Query: 178 GCGCTAACGAGCAAGAAAAGGGGTGCGCTAAGGCGCAACGGCTTTCGCGCAGCTGCTACG 237
||||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct: 337092 GCGCTAACGAGCAAGAAAACGGATGCGCTAAGGCGCAAC----TTCGCGCAGCTGCTACG 337147
Query: 238 CCCTTGCTTCTTGCCTTATCTT 259
||||||||||||||||||||||
Sbjct: 337148 CCCTTGCTTCTTGCCTTATCTT 337173
Score = 89.6988 bits (45.0), Expect = 6.85711e-19
Identities = 67/74 (91%)
Strand = Plus/Minus
Query: 251 GCAAGAAGCAAGGGCGTAGCAGCTGCGCGAAAGCCGTTGCGCCTTAGCGCACCCCTTTTC 192
|||||||||||||||| |||||||||||||| |||||||||||||||| || |||||
Sbjct: 97020 GCAAGAAGCAAGGGCGCAGCAGCTGCGCGAA----GTTGCGCCTTAGCGCATCCGTTTTC 97075
Query: 191 TTGCTCGTTAGCGC 178
||||||||||||||
Sbjct: 97076 TTGCTCGTTAGCGC 97093
Score = 81.7694 bits (41.0), Expect = 1.6716e-16
Identities = 72/82 (88%)
Strand = Plus/Plus
Query: 178 GCGCTAACGAGCAAGAAAAGGGGTGCGCTAAGGCGCAACGGCTTTCGCGCAGCTGCTACG 237
||||||||||||||||||| || ||||||||| ||||| |||| ||||||||| ||
Sbjct: 142655 GCGCTAACGAGCAAGAAAACGGATGCGCTAAGAAGCAAC----TTCGTGCAGCTGCTGCG 142710
Query: 238 CCCTTGCTTCTTGCCTTATCTT 259
||||||||||||||||||||||
Sbjct: 142711 CCCTTGCTTCTTGCCTTATCTT 142736
Score = 79.787 bits (40.0), Expect = 6.60513e-16
Identities = 59/65 (91%)
Strand = Plus/Plus
Query: 188 GCAAGAAAAGGGGTGCGCTAAGGCGCAACGGCTTTCGCGCAGCTGCTACGCCCTTGCTTC 247
||||||||| || |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 356982 GCAAGAAAACGGATGCGCTAAGGCGCAAC----TTCGCGCAGCTGCTACGCCCTTGCTTC 357037
Query: 248 TTGCC 252
|||||
Sbjct: 357038 TTGCC 357046
Score = 63.9282 bits (32.0), Expect = 3.92524e-11
Identities = 35/36 (97%)
Strand = Plus/Plus
Query: 763 AGGAGCGGAAAGCCACTTGACTGTAAGGAGAGGAGC 798
|||||||||||||||||||||| |||||||||||||
Sbjct: 219070 AGGAGCGGAAAGCCACTTGACTCTAAGGAGAGGAGC 219105
Score = 63.9282 bits (32.0), Expect = 3.92524e-11
Identities = 32/32 (100%)
Strand = Plus/Minus
Query: 367 AGCCAGCTGAAGGAAGGTCGCGTTAGCGCCCC 336
||||||||||||||||||||||||||||||||
Sbjct: 241504 AGCCAGCTGAAGGAAGGTCGCGTTAGCGCCCC 241535
Score = 59.9635 bits (30.0), Expect = 6.12861e-10
Identities = 30/30 (100%)
Strand = Plus/Plus
Query: 288 CCTTCTTTCTCAAAGTCAACTTTCTCCCTT 317
||||||||||||||||||||||||||||||
Sbjct: 4021 CCTTCTTTCTCAAAGTCAACTTTCTCCCTT 4050
Score = 59.9635 bits (30.0), Expect = 6.12861e-10
Identities = 30/30 (100%)
Strand = Plus/Plus
Query: 616 TGAAAGCCACTTGACTGTAAGGAAAGGAGC 645
||||||||||||||||||||||||||||||
Sbjct: 174373 TGAAAGCCACTTGACTGTAAGGAAAGGAGC 174402
Score = 59.9635 bits (30.0), Expect = 6.12861e-10
Identities = 36/38 (95%)
Strand = Plus/Minus
Query: 798 GCTCCTCTCCTTACAGTCAAGTGGCTTTCCGCTCCTCT 761
||||||||||||| ||||||||||||||| ||||||||
Sbjct: 227970 GCTCCTCTCCTTAGAGTCAAGTGGCTTTCAGCTCCTCT 228007
Score = 59.9635 bits (30.0), Expect = 6.12861e-10
Identities = 36/38 (95%)
Strand = Plus/Minus
Query: 798 GCTCCTCTCCTTACAGTCAAGTGGCTTTCCGCTCCTCT 761
|||||||| |||||||||||||||||||| ||||||||
Sbjct: 298333 GCTCCTCTGCTTACAGTCAAGTGGCTTTCAGCTCCTCT 298370
Score = 57.9812 bits (29.0), Expect = 2.42164e-09
Identities = 29/29 (100%)
Strand = Plus/Minus
Query: 798 GCTCCTCTCCTTACAGTCAAGTGGCTTTC 770
|||||||||||||||||||||||||||||
Sbjct: 66439 GCTCCTCTCCTTACAGTCAAGTGGCTTTC 66467
Score = 57.9812 bits (29.0), Expect = 2.42164e-09
Identities = 29/29 (100%)
Strand = Plus/Minus
Query: 798 GCTCCTCTCCTTACAGTCAAGTGGCTTTC 770
|||||||||||||||||||||||||||||
Sbjct: 84278 GCTCCTCTCCTTACAGTCAAGTGGCTTTC 84306
Score = 57.9812 bits (29.0), Expect = 2.42164e-09
Identities = 29/29 (100%)
Strand = Plus/Minus
Query: 798 GCTCCTCTCCTTACAGTCAAGTGGCTTTC 770
|||||||||||||||||||||||||||||
Sbjct: 128507 GCTCCTCTCCTTACAGTCAAGTGGCTTTC 128535
Score = 57.9812 bits (29.0), Expect = 2.42164e-09
Identities = 38/41 (93%)
Strand = Plus/Plus
Query: 761 AGAGGAGCGGAAAGCCACTTGACTGTAAGGAGAGGAGCACC 801
|||||||| ||||||||||||||| ||||||||||| ||||
Sbjct: 230162 AGAGGAGCTGAAAGCCACTTGACTCTAAGGAGAGGACCACC 230202
Score = 57.9812 bits (29.0), Expect = 2.42164e-09
Identities = 29/29 (100%)
Strand = Plus/Minus
Query: 798 GCTCCTCTCCTTACAGTCAAGTGGCTTTC 770
|||||||||||||||||||||||||||||
Sbjct: 285778 GCTCCTCTCCTTACAGTCAAGTGGCTTTC 285806
Score = 57.9812 bits (29.0), Expect = 2.42164e-09
Identities = 29/29 (100%)
Strand = Plus/Plus
Query: 770 GAAAGCCACTTGACTGTAAGGAGAGGAGC 798
|||||||||||||||||||||||||||||
Sbjct: 296944 GAAAGCCACTTGACTGTAAGGAGAGGAGC 296972
Score = 57.9812 bits (29.0), Expect = 2.42164e-09
Identities = 35/37 (95%)
Strand = Plus/Minus
Query: 646 GGCTCCTTTCCTTACAGTCAAGTGGCTTTCAGCTCCT 610
||||||| | |||||||||||||||||||||||||||
Sbjct: 298332 GGCTCCTCTGCTTACAGTCAAGTGGCTTTCAGCTCCT 298368
Score = 57.9812 bits (29.0), Expect = 2.42164e-09
Identities = 29/29 (100%)
Strand = Plus/Minus
Query: 798 GCTCCTCTCCTTACAGTCAAGTGGCTTTC 770
|||||||||||||||||||||||||||||
Sbjct: 398912 GCTCCTCTCCTTACAGTCAAGTGGCTTTC 398940
Score = 57.9812 bits (29.0), Expect = 2.42164e-09
Identities = 29/29 (100%)
Strand = Plus/Minus
Query: 798 GCTCCTCTCCTTACAGTCAAGTGGCTTTC 770
|||||||||||||||||||||||||||||
Sbjct: 417189 GCTCCTCTCCTTACAGTCAAGTGGCTTTC 417217
Score = 55.9988 bits (28.0), Expect = 9.56881e-09
Identities = 28/28 (100%)
Strand = Plus/Minus
Query: 1295 TATTTAGCTATTTAGCCTTAGAGAAAGG 1268
||||||||||||||||||||||||||||
Sbjct: 212727 TATTTAGCTATTTAGCCTTAGAGAAAGG 212754
Score = 55.9988 bits (28.0), Expect = 9.56881e-09
Identities = 34/36 (94%)
Strand = Plus/Minus
Query: 645 GCTCCTTTCCTTACAGTCAAGTGGCTTTCAGCTCCT 610
|||||| |||||| ||||||||||||||||||||||
Sbjct: 227970 GCTCCTCTCCTTAGAGTCAAGTGGCTTTCAGCTCCT 228005
Score = 52.0341 bits (26.0), Expect = 1.49401e-07
Identities = 29/30 (97%)
Strand = Plus/Minus
Query: 645 GCTCCTTTCCTTACAGTCAAGTGGCTTTCA 616
|||||| |||||||||||||||||||||||
Sbjct: 66439 GCTCCTCTCCTTACAGTCAAGTGGCTTTCA 66468
Score = 52.0341 bits (26.0), Expect = 1.49401e-07
Identities = 29/30 (97%)
Strand = Plus/Minus
Query: 645 GCTCCTTTCCTTACAGTCAAGTGGCTTTCA 616
|||||| |||||||||||||||||||||||
Sbjct: 84278 GCTCCTCTCCTTACAGTCAAGTGGCTTTCA 84307
Score = 52.0341 bits (26.0), Expect = 1.49401e-07
Identities = 29/30 (97%)
Strand = Plus/Minus
Query: 645 GCTCCTTTCCTTACAGTCAAGTGGCTTTCA 616
|||||| |||||||||||||||||||||||
Sbjct: 128507 GCTCCTCTCCTTACAGTCAAGTGGCTTTCA 128536
Score = 52.0341 bits (26.0), Expect = 1.49401e-07
Identities = 32/34 (94%)
Strand = Plus/Plus
Query: 610 AGGAGCTGAAAGCCACTTGACTGTAAGGAAAGGA 643
|||||||||||||||||||||| |||||| ||||
Sbjct: 230164 AGGAGCTGAAAGCCACTTGACTCTAAGGAGAGGA 230197
Score = 52.0341 bits (26.0), Expect = 1.49401e-07
Identities = 29/30 (97%)
Strand = Plus/Minus
Query: 645 GCTCCTTTCCTTACAGTCAAGTGGCTTTCA 616
|||||| |||||||||||||||||||||||
Sbjct: 285778 GCTCCTCTCCTTACAGTCAAGTGGCTTTCA 285807
Score = 52.0341 bits (26.0), Expect = 1.49401e-07
Identities = 29/30 (97%)
Strand = Plus/Plus
Query: 616 TGAAAGCCACTTGACTGTAAGGAAAGGAGC 645
||||||||||||||||||||||| ||||||
Sbjct: 296943 TGAAAGCCACTTGACTGTAAGGAGAGGAGC 296972
Score = 52.0341 bits (26.0), Expect = 1.49401e-07
Identities = 29/30 (97%)
Strand = Plus/Minus
Query: 645 GCTCCTTTCCTTACAGTCAAGTGGCTTTCA 616
|||||| |||||||||||||||||||||||
Sbjct: 398912 GCTCCTCTCCTTACAGTCAAGTGGCTTTCA 398941
Score = 52.0341 bits (26.0), Expect = 1.49401e-07
Identities = 29/30 (97%)
Strand = Plus/Minus
Query: 645 GCTCCTTTCCTTACAGTCAAGTGGCTTTCA 616
|||||| |||||||||||||||||||||||
Sbjct: 417189 GCTCCTCTCCTTACAGTCAAGTGGCTTTCA 417218
Score = 50.0517 bits (25.0), Expect = 5.9034e-07
Identities = 28/29 (97%)
Strand = Plus/Plus
Query: 770 GAAAGCCACTTGACTGTAAGGAGAGGAGC 798
|||||||||||||||||||||| ||||||
Sbjct: 174374 GAAAGCCACTTGACTGTAAGGAAAGGAGC 174402
Score = 48.0694 bits (24.0), Expect = 2.33265e-06
Identities = 24/24 (100%)
Strand = Plus/Minus
Query: 313 GAGAAAGTTGACTTTGAGAAAGAA 290
||||||||||||||||||||||||
Sbjct: 198902 GAGAAAGTTGACTTTGAGAAAGAA 198925
Score = 48.0694 bits (24.0), Expect = 2.33265e-06
Identities = 33/36 (92%)
Strand = Plus/Plus
Query: 610 AGGAGCTGAAAGCCACTTGACTGTAAGGAAAGGAGC 645
|||||| ||||||||||||||| |||||| ||||||
Sbjct: 219070 AGGAGCGGAAAGCCACTTGACTCTAAGGAGAGGAGC 219105
Score = 46.087 bits (23.0), Expect = 9.21718e-06
Identities = 29/31 (94%)
Strand = Plus/Plus
Query: 221 TTCGCGCAGCTGCTACGCCCTTGCTTCTTGC 251
|||| ||||||||| ||||||||||||||||
Sbjct: 354782 TTCGTGCAGCTGCTGCGCCCTTGCTTCTTGC 354812
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
Number of letters in database: 430597
Number of sequences in database: 1
Lambda K H
1.37 0.711 1.31
Matrix: BLASTN matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Length of database: 430597