BLASTN 2.2.18 Mar-02-2008
Reference: Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig101
(1005 letters)
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
1 sequences; 430597 total letters
Searching................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57013877|ref|NC_006581.1| Nicotiana tabacum mitochondrion ... 1144.3 0.0
>ref|NC_006581.1| Nicotiana tabacum mitochondrion, complete genome
Length = 430597
Score = 1144.31 bits (577.0), Expect = 0.0
Identities = 659/687 (96%)
Strand = Plus/Minus
Query: 682 GGGTCCAGACCCACAAATGAATAGGAAGCGAGGCGAGGGTCCTTCATTAAAGGGGGGAAA 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42758 GGGTCCAGACCCACAAATGAATAGGAAGCGAGGCGAGGGTCCTTCATTAAAGGGGGGAAA 42817
Query: 622 AGAGGGGTGGG-CTTTGTTCTNNNNNNNCCGCCTTGCGCAGCTTTAGAAAGGAGAGAATG 564
||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 42818 AGAGGGGTGGGGCTTTGTTCTGGGGGGGCCGCCTTGCGCAGCTTTAGAAAGGAGAGAAT- 42876
Query: 563 ACTTTCTGAAA----TTCTCTCCAACCCTTTCTATCTATCTTTAGAAGTAGGGCGAGAGA 508
||| |||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 42877 ---TTCAGAAAGTCATTCTCTCCAACCTTTTCTATCTATCTTTAGAAGTAGGGCGAGAGA 42933
Query: 507 AAGTCAATATGATATTTGCGTTGGTTTTTCCAACGAAACTAAGCACTTTTCTTCTTTCTC 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42934 AAGTCAATATGATATTTGCGTTGGTTTTTCCAACGAAACTAAGCACTTTTCTTCTTTCTC 42993
Query: 447 ATTCGGAAGGCTCAGTCCCACACCCTGACTTCAATGATGGGAACAACCTCCGCACTCCGG 388
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42994 ATTCGGAAGGCTCATCCCCACACCCTGACTTCAATGATGGGAACAACCTCCGCACTCCGG 43053
Query: 387 CGCTCCACTGAACAACAGTTCTCCGCCTTACTATATTTAGAATAGTGGTCGATCCTTCGG 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43054 CGCTCCACTGAACAACAGTTCTCCGCCTTACTATATTTAGAATAGTGGTCGATCCTTCGG 43113
Query: 327 GAGTTACATTCGTAACAACATTACATGTTATGTTCACGCGGTGATATTCTATCTTTCCAA 268
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 43114 GAGTTACATTCGTAACTTAATGTAATGTTATGTTCACGCGGTGATATTCTATCTTTCCAA 43173
Query: 267 GAGTACTACCCTGTACGTAGTCTATGTCTGGGGAGCATACTTGACAGGAGATAGACACAG 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43174 GAGTACTACCCTGTACGTAGTCTATGTCTGGGGAGCATACTTGACAGGAGATAGACACAG 43233
Query: 207 GCGGTAGAGGGGTCCCCCACTTCGATTCCCGCCCCGTTAGCATCTACGATCCTAGATAAG 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43234 GCGGTAGAGGGGTCCCCCACTTCGATTCCCGCCCCGTTAGCATCTACGATCCTAGATAAG 43293
Query: 147 GGATTAGTCCGTTAGGTCTTTTCGGTCCGGAGCCGGCTGGTAATGGACCTACTTACCTTG 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43294 GGATTAGTCCGTTAGGTCTTTTCGGTCCGGAGCCGGCTGGTAATGGACCTACTTACCTTG 43353
Query: 87 CTTGTAGACCTGCTGCGGAGCGAACCCTTGTTCTATTGGTTTGGTGGTTGCTACCAAGAC 28
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 43354 CTTGTAGACCTGCTGCGGAGCTAACCCTTGTTCTATTGGTTTGGTGGTTGCTACCAAGAC 43413
Query: 27 GATTTCTTTATGCCCNTCAAAGGACCT 1
||||||||||||||| |||||||||||
Sbjct: 43414 GATTTCTTTATGCCCATCAAAGGACCT 43444
Score = 595.199 bits (300.0), Expect = 2.86647e-171
Identities = 306/308 (99%)
Strand = Plus/Minus
Query: 1005 GGAGAGAAGATTTCGTCCACCAAGCGGGACAGAGTGCGACCCCTAAGCAATTGGGGGTTC 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42425 GGAGAGAAGATTTCGTCCACCAAGCGGGACAGAGTGCGACCCCTAAGCAATTGGGGGTTC 42484
Query: 945 TCGCTCATCTCTTGGGGGTCCATCTCATCTGAAAACTTTTCCTCTTCCATTAGCATAGCT 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42485 TCGCTCATCTCTTGGGGGTCCATCTCATCTGAAAACTTTTCCTCTTCCATTAGCATAGCT 42544
Query: 885 AAATTTGAATAGGATGAATCAGCCTCAGGAAAAGTAAGCCCCCTTTCCTTGATTGAATTT 826
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 42545 AAATTTGAATAGGATGAATCAGCCTCAGGAAAAGTAAGCCCCCTTGCCTTGATTTAATTT 42604
Query: 825 GGCTTCGCTGCGCCCTGAATCAATCAAAAAGCTTATTGATTTGATTCATCCCATTTCATT 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42605 GGCTTCGCTGCGCCCTGAATCAATCAAAAAGCTTATTGATTTGATTCATCCCATTTCATT 42664
Query: 765 TATTTGGGCGAGAGGGAGGCTGTGAGTCACCTGGGCTACGGATTTTTCCGTTGGTTGATT 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42665 TATTTGGGCGAGAGGGAGGCTGTGAGTCACCTGGGCTACGGATTTTTCCGTTGGTTGATT 42724
Query: 705 CTCGAAAT 698
||||||||
Sbjct: 42725 CTCGAAAT 42732
Score = 65.9106 bits (33.0), Expect = 6.15279e-12
Identities = 33/33 (100%)
Strand = Plus/Plus
Query: 784 AAATCAATAAGCTTTTTGATTGATTCAGGGCGC 816
|||||||||||||||||||||||||||||||||
Sbjct: 200396 AAATCAATAAGCTTTTTGATTGATTCAGGGCGC 200428
Score = 59.9635 bits (30.0), Expect = 3.79592e-10
Identities = 33/34 (97%)
Strand = Plus/Plus
Query: 511 CTCGCCCTACTTCTAAAGATAGATAGAAAGGGTT 544
||||||||||||||||||||||||||||| ||||
Sbjct: 309772 CTCGCCCTACTTCTAAAGATAGATAGAAAAGGTT 309805
Score = 57.9812 bits (29.0), Expect = 1.49991e-09
Identities = 29/29 (100%)
Strand = Plus/Plus
Query: 545 GGAGAGAATTTCAGAAAGTCATTCTCTCC 573
|||||||||||||||||||||||||||||
Sbjct: 42868 GGAGAGAATTTCAGAAAGTCATTCTCTCC 42896
Score = 52.0341 bits (26.0), Expect = 9.25356e-08
Identities = 35/38 (92%)
Strand = Plus/Minus
Query: 550 CTCTCCAACCCTTTCTATCTATCTTTAGAAGTAGGGCG 513
|||||| ||| |||||||||||| ||||||||||||||
Sbjct: 236527 CTCTCCCACCTTTTCTATCTATCATTAGAAGTAGGGCG 236564
Score = 42.1223 bits (21.0), Expect = 8.91351e-05
Identities = 21/21 (100%)
Strand = Plus/Plus
Query: 515 CCCTACTTCTAAAGATAGATA 535
|||||||||||||||||||||
Sbjct: 393467 CCCTACTTCTAAAGATAGATA 393487
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
Number of letters in database: 430597
Number of sequences in database: 1
Lambda K H
1.37 0.711 1.31
Matrix: BLASTN matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Length of database: 430597